DO YOU NEED AN ELECTRONIC LAB NOTEBOOK?
Electronic laboratory notebooks aren't just for industry anymore. Many ELNs are priced for academia, "and rapidly it's coming to the point where science cannot be done without it," says Douglas Perry, dean of the college of informatics at Northern Kentucky University. Large companies typically use ELNs to standardize quality control or establish a legal data trail; academic labs use them to gain searchable access to years' worth of data or the ability to share data easily.
So, do you need an ELN? Ask yourself these four questions.
1. Do you generate high-throughput or automated data?
Ellen Quardokus, a research associate at Indiana University, uses Textco's Gene Inspector ELN to analyze and integrate genomics and proteomics data in a unified electronic format. "It had all of the things that I typically do to my sequence in one place," Quardokus says. Since sequences are linked to analyses, when she updates a sequence, results are adjusted accordingly.
Today even modest academic labs can generate massive amounts of information, thanks to sequencers, microarrays, and other genomics tools. An ELN can help organize, analyze, and archive these data.
2. Do you collaborate with other labs?
In the mid-1990s, says Jim Myers of the University of Illinois, Urbana-Champaign, "we started realizing that you could use [the Web] not only to get information but to put information out." With funding from the Department of Energy, Myers (then of Pacific Northwest National Laboratory) and his colleagues designed a Web-based ELN (http://collaboratory.emsl.pnl.gov) that allows scientists to do science remotely through collaborations over the Internet.
Collaborating scientists can log in to their system remotely, and then download and upload text, images, and many other types of files, Myers says. Once a researcher submits data to the system, these data are sent out to the server and appear on an HTML page. The software can be configured with different workgroups and permission setups to accommodate collaborators.
3. Do you generate lots of visual data?
Microscopy and other modern techniques often produce large volumes of imaging data and related information, such as experimental details. The imaging core facility at Children's Hospital, Boston, uses Axiope's Catalyzer to track its data. According to former manager Matthew Salanga, being able to bring images straight from the microscope or other data-acquisition instruments into your ELN, where it can be annotated and analyzed, helps research progress efficiently, "because you take a level of error out of it."
4. Do you have high personnel turnover?
At the Structural Genomics Consortium in Oxford, UK, researchers archive and track their work using the ConturELN from Contur Technologies. Brian Marsden, principal investigator for research informatics at SGC-Oxford, says the ELN ensures that when people leave the lab, it retains access to their accumulated knowledge. "There are a number of cases where somebody has left, and we had to go back to look at the data generated previous to their leaving," Marsden says. "We can look at the ELN - the traces, the gels, the data - and pick up where they left off."
Some of Today's ELNs
AXIOPE'S CATALYZER ELN
www.axiope.com
This software provides electronic data capture and an ELN for biological and biomedical research, including user-configurable data entry forms and data access over the Web.
CAMBRIDGESOFT E-NOTEBOOKS
www.cambridgesoft.com
CambridgeSoft offers two Web-based packages, E-Notebook Enterprise 8.5 and E-Notebook Workgroup 9.0, and both allow pages to include Excel spreadsheets, Microsoft Word documents, ChemDraw drawings, and spectral data.
CONTURELN
www.contur.se
This enterprise ELN resembles the operation of Microsoft Office packages, and it can handle text, images in various formats, chemical structures, and other types of information.
KALABIE ELN
www.kalabie.com
This ELN software includes core functions - including experiment management - and can be extended to specific areas, such as medicinal chemistry or process development. It also conforms to the needs of a regulated environment, including US federal regulation 21 CFR Part 11 compliance.
METTLER TOLEDO VIRTUALLAB
www.mt.com/virtuallab
Mettler Toledo's combined package includes ELN functions and workflow automation. This package was designed specifically for pharma and chemical companies to share data throughout an enterprise.
PACIFIC NORTHWEST NATIONAL LABORATORY ELN
http://collaboratory.emsl.pnl.gov/software/eln/
This Web-based ELN is free and it manages data and provides graphing and imaging capabilities. It also works on a wide range of systems, including Irix, Linux, Macintosh, Solaris, and Windows.
RESCENTRIS' CERF
www.rescentris.com
Rescentris advertises this ELN for pharma, biotech, academic labs, and more. CERF provides graphical interfaces, a range of search options, and is 21 CFR Part 11 compliant.
SYMYX ELN
http://www.symyx.com
This software comes in different versions for specific applications, such as the Discovery Notebook for pharma and the Analytical Notebook for analytical chemists. Each product can be used in regulated environments.
TEXTCO GENE INSPECTOR
www.textco.com
This software provides an ELN and sequence analysis. Initially available for Macintosh environments only, a beta version exists for Windows.
















